The Germ Guy: Confessions of a Mercurial Microbiologist



Putting Perspective On Personal Fermentation

Hey everyone,

First off, it’s been an incredible few months since the release of The Germ Files. I’ve been touring all over Ontario and have been thrilled to meet hundreds of people all interested in our daily relationship with microbes. Also, I was pleasantly surprised to see a very kind review in the Washington Post.


You can read the entire piece here:

Over the course of the tour, one section seemed to gain interest with some of the audience members. It had to do with making fermented foods from microbes isolated from human fecal matter. The idea of finding new bacteria in the gut did have an expected effect…


monkees-nope(if you don’t know who these gents are, ask your grandparents)

But those feelings passed once I explained the lengthy process of isolating, purifying, and then testing a particular species. By the time fermentation happened, the bacterium had no direct links to the source an definitely would not have any related tastes. This practice is normal for any company wishing to use ‘human strains’ for their fermented foods and of course, probiotics.

However as in life there are always exceptions and just this past week, one seemingly has appeared.

bottled-instinctThe Order of Yoni Beer by Bottled Instinct

It’s well known beer is usually fermented with yeast. However, there are certain styles, such as the one pictured above, made with what is known as a sour mash. It’s particularly popular with home brewers though there are some larger companies using this technique to make a variety of choices. It’s also used to make certain American Whiskeys.

The key to a sour mash is the formation of lactic acid. To accomplish this, several species of bacteria have been used throughout the ages. One happens to be Lactobacillus acidophilus. The name may sound familiar because it is also a probiotic and as many on the tour have learned, is my favorite microbe.

jason-acidophilusMe and my L. acidophilus

The bacterium can also be found in a few places within the human body. The first is the same as I mentioned above. The company didn’t look there.

For those fluent in Hindi, the name of the beer, The Order of Yoni, gives away the other location. If you’re not up to speed on the Indian language, the word Yoni literally means the womb.

From a scientific perspective, the idea isn’t all that odd. After all, a sour mash made from isolates of Lactobacillus acidophilus acquired from a human female’s genitourinary microbiome may not seem all that bad. It might make for an interesting science or art project. After all, there have been such endeavours conducted in the past albeit not with this particular region of the body.

However, the company selling the product doesn’t quite explain it in the same way. Here’s a quote from their site:

“Using hi-tech of microbiology, we isolate, examine and prepare lactic acid bacteria from a unique woman. The bacteria, lactobacillus, transfer woman’s features, allure, grace, glamour, and her instincts into beers and other products, turning them into dance with lovely goddess.”

Needless to say…

carrie-wth(If you don’t know who this is, ask your parents)

As you might expect from the description and the model, this venture is all about trying to bottle the essence of beauty and provide it in a relatively easy to digest format. The company goes even further to name the person from whom the sample will be taken…a model named Alexandra Brendlova. If you don’t know who she is, here’s a promotional photo.


While this may be enough to convince people to give this a try, from a scientific perspective, the only place you’re going to feel anything is your wallet.

If you go deeper into the site, the company explains the process of isolating this unique Lactobacillus acidophilus for brewing. It’s no different than trying to isolate a bacterium from that other region. The samples are cultured, and the bacteria are isolated, and then grown until they reach the right levels to be used in the first stages of fermentation. This ensures safety but also takes away any links the species may have had to the owner.

There is one bright side to this venture. This concept shows just how popular microbes have become over the last decade. It really makes me wanna…

5sos(If you don’t know who these guys are, ask your kids)

While this particular product may not provide anything more than an intriguing sour mash beer, the interest from the media and those actually investing in the company reveals this may be the beginning of mainstream human microbial artisanal gastronomy.

If you are interested in going this route, I’d love to hear about it. Just be sure not to overstate the benefits. Though bacteria may come from a specific individual or type of person, don’t expect to transfer their outwardly qualities. A person may gain health benefits and perhaps help to change several biological parameters. But in terms of features, allure, grace, and glamour, no amount of Lactobacillus or any other microbe for that matter is going to help.

If this was the case, fecal transplantation would be a far more common practice.



Would love to hear your thoughts…









A Trifecta Coda To Antibiotic Awareness Week

Hey everyone…

I know it’s been some time since I wrote here. For more on why, check out my front page.

Last week was a special time for those working in public health.  It was the first…


After 70 years of knowing bacteria can become resistant to these life-saving drugs, the world has taken notice.  You may have seen and heard headlines in the media over the last week discussing antibiotics. The situation has become a crisis as we face what is known as the post-antibiotic era.

But what exactly does that mean? Perhaps this might help:


This is just in the United States – worldwide, the number is far greater.

The statistics are frightening and the risk for troubles are growing.  But while the message about antibiotic resistance spreads, some of the more valuable information has been left unsaid.

Now that Antibiotic Awareness Week is over, I wanted to add a coda to the event. I wanted to bring attention to the issue by going into the science of the issue and show some of the latest work describing just how resistance comes about, what we can do in the present, and a look to the future.

popsci-resistanceThe Complexity of Antibiotic Resistance

First, my Popular Science column explores how antibiotic resistance comes about. It’s all about a word used quite often in ecology:  fitness.  When a bacterium comes into contact with an antibiotic, it may die but it may also find a way to survive. Depending on the drug, the fitness differs, even for the same bacterium.  This reveals how dynamic resistance is as a whole and why it is so difficult to prevent.  After all, you’re looking for a needle in a haystack.

mechanismThe Ways Antimicrobial Peptides can kill bacteria

My Huffington Post Canada column takes a different look at the problem by looking forward to the future. Because resistance to antibiotics is so hard to tackle, the best way to approach it is to look for alternative measures.  One of the best options is called an antimicrobial peptide, or AMP.

These molecules are simple in design and extremely effective at killing bacteria. The supply could be endless as almost every species on Earth produces them. All we need to do is go hunting for them and then test them in the lab. Though it may take some time, AMPs may be the answer to antibiotics and may one day become the treatment of choice.

Finally, I wanted to take a completely different perspective on antibiotic resistance not seen in the news. For this, I teamed up with two great video experts, Jay Trout and Sean Webb. Together, we put a short 2:22 video together on where you can find antibiotic resistance and what you can do to help prevent the post-antibiotic era.

As you’ll see, there are three easy ways you can make a difference.  After all, we all play a role in stalling the approach of the post-antibiotic era.  We can all do our part.

For those wondering, the video is in Standard Definition so anyone with a slow internet stream can still watch it. If you are looking for an HD version, just let me know.

Antibiotic resistance will continue to be a problem for a very long time. But knowing the trifecta past, present, and future will ultimately help us to achieve the goals of Antibiotic Awareness Week. We cannot lose our ability to use antibiotics…at least not yet.  Let’s make sure we are all helping to make a difference.

As always, would love to know your thoughts.



A Germ Wars Webchat…


The webchat went extremely well!  A special ‘Thank You’ to participant “Diane G.” for sharing her longtime support.  People like her give me even more reason to continue what I am doing.  If you missed it, you can read the text here:

My interview with CBC Ottawa Morning is now up.  You can listen to it here:

Tuesday’s story on kids and germs is now up.  Watch it here:


Hi everyone,

It’s been a while since I’ve posted here although I hope you have all been enjoying my articles with the Huffington Post.  It continues to be a blast and I am eternally grateful for all the positive feedback I have received.

This week, CBC Ottawa has been running a series called Germ Wars and the great David Gerow took me on a wild journey around Ottawa where we went on the hunt for germs.

The series started yesterday and even featured a cool Germ Quiz which has garnered some very interesting comments.  The series continued today with a discussion on kids and germs and will conclude tomorrow with a story on pets and germs.

Now here’s the fun part…

Tomorrow, Wednesday October 24, at Noon EDT, I’ll be taking questions from the public during a one hour webchat.  You can head to the site then and ask anything relating to germs, hygiene and health.  The link is:

I hope you can find some time to get involved in the discussion.  Based on what I have already heard from people who have seen the series and taken the quiz, it will be a lively time.

Looking forward to seeing you there!

Happy #handhygiene Day!

It’s May 5th and the world is celebrating!

(yes, it’s Cinco de Mayo, but it’s also…)


Or, as I like to call it:  #handhygiene Day!

The original reason for this day was to help prevent infections in health care activities worldwide.  While others and myself have expanded the scope to include any hand hygiene activities, the WHO still keeps its focus on making some of the worst offenders…doctors and other health care professionals…get with the message and start to help rather than hinder health.

With that, here are a few ways to learn a little more about the importance of #handhygiene and to engage others in discussion, debate and of course, silly photo sharing!

1. Press Release
Here’s a great press release that offers a little more insight into why Clean Your Hands Day exists and perhaps a few pieces of data that some might not want to know.

Click for more

2. Twitter Feed
If you take a peek to the right of this page, you’ll notice my twitter feed.  I’m working to share the seven important points on #handhygiene.  There are some fundamentals that simply need to be known to stay safe anywhere.  I hope you check out my feed – or just click here – and enjoy

3. Share YOUR story!
I know that each and every one of us has a story to tell about how #handhygiene has helped us in one way or another.  I have several although perhaps my favorite occurred about 15 years ago in a land quite far away:

It was 1997 and I was deep in the Southern regions of Turkey on a tour tracing back the history of our civilization (hey, I’m kinda into that stuff!).  The tour bus came to a stop at a convenience stand that acted as a grocery, restaurant and pit stop.  After picking up some lokum in the grocery and some elma chai in the resto, I went for the pit stop.  Let’s just say that our concept of a toilet is different there.

(they lose a dimension it seems).

It was one of my first times working with a 2-D toilet and it didn’t go well.  I won’t get into details but I was thankful that there was a hose running nearby.

I had ‘finished my business’ I noticed that there was no sink.  When I ventured back to the stand, I asked for soap and water (sabun ve su) and was met with a curious glance.  A moment later, the nice gentleman revealed a bottle with a yellow liquid inside.  He presented it to my nose and I noticed that it was a lemon scented perfume.  It was a nice thought but it wasn’t about to help.

Back when I was a child, my mother had come up with a great formulation to stop the the spread of infections.  It was a combination of 70% rubbing alcohol and 10% glycerin.  The formulation had been used for decades ‘under the radar’ as a means to prevent infections in the field.  For me, the mixture had been a hand saver on many occasions throughout my school and university years and it was going to be nearby during any trip.

So, with a nod to the gentleman, I went back to the bus, found my backpack and took out a small bottle containing the mixture.  That moment of knowing that you are safe is unlike any other.  At that moment, I put the that bottle in my pant pocket and decided that for as long as I live, I’ll never be unprepared again.

It’s my prop de vivre!:)

Okay, now it’s your turn!  Share your story on how #handhygiene has helped you stay safe in the comment box below and I’ll share it with the rest of the Twitterverse!

4. Share your photo
Everyone loves a great photo!  Now it’s your turn to share your #handhygiene photo with the world.

  1. Take a photo of handwashing, sanitizer use, teaching your kids, teaching your parents, and so on.  Show your passion for staying clean!
  2. Share it on the social media platform of your choice.
  3. Tell me about it and I’ll post it here.
  4. Have fun!!!

All right, it’s time for me to sign off and spread the sanitizer!  Have a fantastic #handhygiene day and I look forward to reading your stories and seeing your photos.

Happy #handhygiene Day to you all!

Tomorrow is #handhygiene day!!!

It’s that time of the year again and I couldn’t be happier.

Two years ago, I started #handhygiene in support of the World Health Organization’s SAVE LIVES: Clean Your Hands campaign to improve hand hygiene in health care worldwide.

Since then, #handhygiene has grown to include every aspect of health and hygiene from the sublime to the absurd.  The hashtag is now listed with the Healthcare Hashtag Project and continues to move ahead without any sign of slowing.

Ultimately, I have to thank people such as Barry Colpitts (@Colpittsb), Patrick Boshell (@DebMedProgram & @Deb_Canada), Louise Taillon (@EnviroWeezy), the Canadian Patient Safety Institute (@Patient_Safety), Michelle Forman (@APHLNews), Lana Targett (@LanaTargett) and our very own handwashing superhero, the Mighty Bubble (@Mighty_Bubble) for making #handhygiene work every day of the year.

There have been hundreds of others who have contributed over the years (some you can see above) and I am grateful to each and every one of them for finding room for #handhygiene somewhere in the 140 characters allowed (it’s not easy!).

Finally, I am truly grateful to the people who inspired #handhygiene in the first place.

World Health Organization.  

To Christy and Sari, I am honoured that you’ve taken the time to notice the hashtag, the work that we are all doing and to share your plans and materials with The Germ Guy.

Now for this year’s #handhygiene day…

I’ll be sending out messages from the WHO pointing out why we celebrate this day and why we need to keep focusing on how to keep our patients safe.  I’ll be posting to Twitter, Facebook and of course here on my blog.  I hope that you take the time to read, share, retweet and comment.

One final note – if you have any personal stories, concerns or ideas, be sure to put them here.  I’ll be sharing them with the people at the WHO in the hopes that they will continue to keep record of the realities that exist and how we can best move forward in safety, health and of course, #handhygiene.

Until tomorrow…


Ever seen something in the media that just makes you smile?

Today, I had that moment.  Take a look at the following advertisement for a local newspaper.

Do you see it?  Way down in the bottom right hand corner.

Yup, it’s Germs.

The message is simple:  germs are easy to share although the value of sharing isn’t all that great.

Now that is a great message for hygiene!  Well done Metro!

(and yes, I know you’re trying to increase circulation but c’mon, this is just fabulous!!!)

Oh, and if you are extra observant, you may see that sharing germs is apparently more valuable than sharing porcupines.  Why?  Let’s just say that I would prefer not to delve into that controversy.  

Are you a #handhygiene hero?

I don’t normally like to send readers to quizzes – I know I hate them – but this one actually made me both smile and think.  It’s called…

(yes, I know…inventive)

Don’t let the title fool you though.  It is NOT easy!

Before you tackle the quiz, I just want to say thanks to QuickMedical for showing me the quiz and allowing me to show the questions.  Also, the cool graphic above comes from the Canadian Patient Safety Institute, which is another great resource for #handhygiene information and the organization behind

The link to the answers is below but I would ask that you give it a try first.  Some may not be relevant to your day to day activities but overall, it’s a great way to test your #handhygiene knowledge.

Here’s the quiz:

1. After taking a patient’s blood pressure, the doctor or nurse should wash their hands. True or False.

2. Wet or damp hands spread 1000 times more germs than dry hands.
True or False.

3. In the 1960’s rinsing hands with antiseptic was believed to be less effective than hand washing. True or False.

4. According to CDC the single most important thing we can do to keep from getting sick and spreading illness to others is to clean our hands.
True or False.

5. Only 75% of female and 60% of male middle and high school students washed their hands after using the bathroom.
True or False.

6. Hand sanitizer is not as effective in germ control as hand washing.
True or False.

How do you think you did?  Well, click on the link below and find out the answers!

If you feel really excited about your score, let me know in a comment.  I’ll be sure to let everyone know that you are a #handhygiene hero!

Remember when…?

In a few hours, the New York Giants will face off against the New England Patriots in the Super Bowl.  We all know that this is going to be a great match not only because of the Manning-Brady battle to come, but also because this is the rematch of Super Bowl XLII in 2008 when the Giants put an end to the Patriots’ perfect season and won the prize.

For me, February 2008 brings back another memory.

It was my first ever live appearance on CTV Ottawa as the “Germ Guy”

Over the last 4 years, I’ve been fortunate enough to grow from the once-every-few-months appearances on the News at Noon to over 10 million views combined between the news media, the press, radio and the internet.  I can honestly say that I know what it feels like to be the 2008 Giants…the epitome of underdogs yet somehow finding a way to win.

Germ discussions are now commonplace, #handhygiene is continually active and I receive about one media call a week.  It’s an amazing feeling, especially considering my choice of topic!  But I realize that I could never have done any of this without the support, encouragement and views of everyone out there reading this post.

So, as we move closer to the big game and the release of my ads, let me just say thanks again for helping me get to this place and I look forward to even bigger things to come in the future.


The Education of Germs…

I received a note this morning from a colleague, Tim Handorf, at Best Colleges Online.

They have written a rather excellent blog post looking at the places on campus where you might find germs and how to best protect yourself from gaining more than a higher level of education.

I read the article and just have to share it with everyone here.  It gives a rather interesting perspective on day to day life and how each student has to pay as close attention to their health as they do their studies and extracurricular activities.

And besides, where else can you read about the dangers of “Beer Pong”.

Beer Pong

So head on over and enjoy the post:

The 20 Germiest Places on a College Campus

And, as always, I’m looking forward to hearing your thoughts.

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